Basic Information
Locus ID:
gene-LOC132626705
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Domain with 2 conserved Trp (W) residues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 102893043 | 102901998 | - | gene-LOC132626705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 129,870.19 Da | 64.14 | 52.85 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 528 | 722 | 3.51688E-98 | - |
| CDD | cd18787 | SF2_C_DEAD | 736 | 865 | 5.24427E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 541 | 711 | 1.4E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 8.1E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 748 | 856 | 2.5E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 588 | 872 | 3.25E-76 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 8.39E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 725 | 898 | 4.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 491 | 724 | 4.0E-89 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 54 | 2.9E-5 | - |
| SMART | SM00490 | helicmild6 | 776 | 856 | 4.7E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.3E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 536 | 739 | 7.5E-66 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 548 | 722 | 31.376965 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 751 | 895 | 25.526798 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 517 | 545 | 11.760326 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3687 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 668 | 676 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1035 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 938 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1171 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1035 | 1159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 284 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_019253481.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Nicotiana attenuata] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S4C4L7 | DEAD-box ATP-dependent RNA helicase 40-like OS=Nicotiana tabacum OX=4097 GN=LOC107815007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology