Basic Information
Locus ID:
gene-LOC132626648
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 95254245 | 95266377 | + | gene-LOC132626648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 57,629.90 Da | 50.27 | 76.99 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 332 | 509 | 2.21182E-115 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 331 | 438 | 2.9E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 5 | 93 | 3.5E-13 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 464 | 2.09E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 319 | 509 | 2.2E-73 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 122 | 1.6E-30 | - |
| SMART | SM00232 | pad1_6 | 334 | 462 | 3.9E-15 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 335 | 465 | 29.652739 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 330 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_006355400.1 | PREDICTED: AMSH-like ubiquitin thioesterase 3 [Solanum tuberosum] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0V0IEK0 | Putative AMSH-like ubiquitin thioesterase 3-like OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology