Basic Information
Locus ID:
gene-LOC132626478
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 48993695 | 48997232 | + | gene-LOC132626478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 86,746.56 Da | 46.71 | 71.69 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 136 | 189 | 1.93712E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 288 | 339 | 7.8E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 208 | 270 | 2.9E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 277 | 1.48E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 289 | 340 | 4.59E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 217 | 5.74E-16 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 755 | 782 | 5.89E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 755 | 782 | 6.4E-7 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 727 | 754 | 4.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 223 | 2.7E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 266 | 512 | 6.2E-76 | - |
| SMART | SM00647 | ibrneu5 | 208 | 270 | 5.3E-17 | IPR002867 |
| SMART | SM00547 | zf_4 | 730 | 754 | 0.0031 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 278 | 339 | 1.8E-4 | IPR002867 |
| SMART | SM00547 | zf_4 | 757 | 781 | 4.5E-8 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 755 | 782 | 9.258115 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 343 | 46.066452 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 185 | 9.405901 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 759 | 778 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_016581061.1 | probable E3 ubiquitin-protein ligase ARI7 [Capsicum annuum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3DFT6 | RBR-type E3 ubiquitin transferase OS=Capsicum chinense OX=80379 GN=BC332_01937 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626478 |
| Solanaceae | Solanum chilense | 1 | SOLCI001785300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008425 |