Basic Information
Locus ID:
gene-LOC132626460
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 167787560 | 167791575 | + | gene-LOC132626460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 75,904.16 Da | 32.48 | 89.71 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 463 | 671 | 1.3221E-81 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 104 | 265 | 1.64091E-92 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 531 | 659 | 3.6E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 101 | 269 | 1.2E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 298 | 414 | 3.3E-19 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 101 | 280 | 3.73E-45 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 287 | 440 | 3.27E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 463 | 678 | 4.04E-36 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 288 | 450 | 7.6E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 98 | 274 | 1.5E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 455 | 673 | 3.9E-53 | - |
| Coils | Coil | Coil | 428 | 448 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_009773010.1 | PREDICTED: pyruvate decarboxylase 2 isoform X1 [Nicotiana sylvestris] | 0 |
| P51846 | Pyruvate decarboxylase 2 OS=Nicotiana tabacum OX=4097 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7WFK1 | pyruvate decarboxylase OS=Nicotiana sylvestris OX=4096 GN=LOC104223295 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology