Basic Information
Locus ID:
gene-LOC132626279
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17834689 | 17837882 | + | gene-LOC132626279 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 34,834.29 Da | 56.63 | 49.56 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 193 | 235 | 2.39044E-24 | - |
| Pfam | PF13639 | Ring finger domain | 193 | 235 | 1.4E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 37 | 3.3E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 240 | 3.98E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 241 | 6.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 194 | 234 | 6.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 194 | 235 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 306 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_009794149.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7XWZ3 | RING-type E3 ubiquitin transferase OS=Nicotiana sylvestris OX=4096 GN=LOC104240945 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology