Basic Information
Locus ID:
gene-LOC132626142
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10516597 | 10521096 | - | gene-LOC132626142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 25,333.27 Da | 51.88 | 81.54 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 102 | 162 | 4.8E-8 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 89 | 165 | 1.97E-14 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 89 | 178 | 3.5E-23 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 102 | 227 | 9.078988 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 108 | 130 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73660.1 | protein tyrosine kinase family protein. Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. | 0 |
| RefSeq | XP_016563189.1 | probable serine/threonine-protein kinase SIS8 isoform X3 [Capsicum annuum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8G5B0 | serine/threonine-protein kinase EDR1-like isoform X3 OS=Capsicum annuum OX=4072 GN=LOC107862210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 1 | Sgl36013 |
| Solanaceae | Lycium barbarum | 35 | gene-LOC132601393, gene-LOC132607984, gene-LOC132608722 ... |
| Solanaceae | Solanum chilense | 11 | SOLCI000202400, SOLCI000775100, SOLCI001269100 ... |
| Solanaceae | Solanum pennellii | 18 | gene-LOC107001376, gene-LOC107003998, gene-LOC107006315 ... |