Basic Information
Locus ID:
gene-LOC132626051
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 162354679 | 162359745 | - | gene-LOC132626051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 61,131.28 Da | 32.61 | 80.50 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 368 | 427 | 5.20284E-14 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 61 | 319 | 1.48751E-136 | - |
| CDD | cd00051 | EFh | 439 | 502 | 7.48289E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 62 | 320 | 1.4E-75 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 438 | 501 | 2.9E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 368 | 427 | 6.2E-9 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 58 | 328 | 4.32E-89 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 359 | 501 | 3.71E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 148 | 329 | 1.5E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 330 | 504 | 9.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 147 | 1.4E-28 | - |
| SMART | SM00054 | efh_1 | 439 | 467 | 0.03 | IPR002048 |
| SMART | SM00054 | efh_1 | 476 | 504 | 0.0031 | IPR002048 |
| SMART | SM00054 | efh_1 | 367 | 395 | 2.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 403 | 431 | 0.13 | IPR002048 |
| SMART | SM00220 | serkin_6 | 62 | 320 | 6.8E-101 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 472 | 507 | 11.082272 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 363 | 398 | 13.341799 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 435 | 470 | 12.198088 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 399 | 434 | 10.412781 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 62 | 320 | 49.078209 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 68 | 95 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 182 | 194 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 448 | 460 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 485 | 497 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 376 | 388 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 412 | 424 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 42 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_009791661.1 | PREDICTED: calcium-dependent protein kinase 24 isoform X1 [Nicotiana sylvestris] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7XPW5 | calcium-dependent protein kinase 24 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104238867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology