Basic Information
Locus ID:
gene-LOC132626038
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7421399 | 7432737 | + | gene-LOC132626038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 98,587.09 Da | 37.05 | 78.35 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 426 | 482 | 5.40915E-28 | - |
| CDD | cd04716 | BAH_plantDCM_I | 163 | 284 | 3.75419E-60 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 491 | 841 | 2.2E-32 | IPR001525 |
| Pfam | PF01426 | BAH domain | 166 | 272 | 4.1E-10 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 443 | 482 | 2.6E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 421 | 484 | 7.7E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 313 | 842 | 2.1E-76 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 297 | 398 | 1.1E-13 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 99 | 268 | 6.9E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 645 | 808 | 1.8E-218 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 425 | 859 | 1.8E-218 | - |
| SMART | SM00439 | BAH_4 | 164 | 283 | 4.1E-19 | IPR001025 |
| SMART | SM00298 | chromo_7 | 426 | 485 | 4.4E-8 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 164 | 283 | 18.623711 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 427 | 480 | 11.779201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 313 | 849 | 45.560959 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 497 | 509 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 586 | 599 | 3.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 314 | 330 | 3.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 540 | 554 | 3.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_006354167.1 | PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Solanum tuberosum] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7E7N6 | DNA (cytosine-5-)-methyltransferase OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology