Basic Information
Locus ID:
gene-LOC132626037
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7396159 | 7411459 | + | gene-LOC132626037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 100,031.05 Da | 39.88 | 82.71 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 436 | 492 | 1.30982E-28 | - |
| CDD | cd04716 | BAH_plantDCM_I | 173 | 293 | 3.65435E-58 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 437 | 492 | 4.0E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 501 | 851 | 2.1E-31 | IPR001525 |
| Pfam | PF01426 | BAH domain | 176 | 289 | 5.6E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 323 | 852 | 9.01E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 428 | 493 | 1.03E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 309 | 408 | 4.6E-13 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 109 | 278 | 4.0E-46 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 435 | 869 | 7.8E-218 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 655 | 818 | 7.8E-218 | - |
| SMART | SM00298 | chromo_7 | 436 | 495 | 1.4E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 174 | 293 | 4.1E-19 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 437 | 490 | 13.372001 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 174 | 293 | 18.7092 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 323 | 859 | 45.392036 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 460 | 480 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 507 | 519 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 324 | 340 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 550 | 564 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 596 | 609 | 1.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 434 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_006354167.1 | PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Solanum tuberosum] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3DF13 | DNA (Cytosine-5)-methyltransferase 1 OS=Capsicum chinense OX=80379 GN=BC332_01667 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology