Basic Information
Locus ID:
gene-LOC132626025
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7178671 | 7192891 | + | gene-LOC132626025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 34,808.42 Da | 44.14 | 69.97 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 173 | 301 | 1.14472E-61 | - |
| CDD | cd16571 | RING-HC_SIAHs | 58 | 95 | 8.23196E-17 | - |
| Pfam | PF03145 | Seven in absentia protein family | 101 | 299 | 5.8E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 112 | 303 | 4.97E-45 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 100 | 5.59E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 111 | 1.3E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 300 | 1.6E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 167 | 4.7E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 112 | 172 | 14.151381 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 95 | 9.74522 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_004228679.1 | E3 ubiquitin-protein ligase SINAT2 [Solanum lycopersicum] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H4C484 | RING-type E3 ubiquitin transferase OS=Solanum lycocarpum OX=329783 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology