Basic Information
Locus ID:
gene-LOC132625844
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2519971 | 2521659 | + | gene-LOC132625844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 50,229.13 Da | 37.58 | 101.99 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 77 | 1.63416E-21 | - |
| Pfam | PF04564 | U-box domain | 29 | 105 | 3.4E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 426 | 4.87E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 110 | 6.18E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 111 | 1.2E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 219 | 438 | 1.8E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 32 | 100 | 5.6E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 107 | 31.050173 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_006364055.1 | PREDICTED: U-box domain-containing protein 21-like [Solanum tuberosum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | D7RX04 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology