Basic Information
Locus ID:
gene-LOC132625745
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 159219856 | 159221382 | - | gene-LOC132625745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 16,853.84 Da | 51.64 | 64.77 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 88 | 131 | 5.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 139 | 7.34E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 27 | 82 | 9.02E-16 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 133 | 1.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 90 | 131 | 5.5E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 26 | 89 | 26.934381 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 131 | 11.825393 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | 5.0 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_009769583.1 | PREDICTED: uncharacterized protein LOC104220411 isoform X1 [Nicotiana sylvestris] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3YB77 | uncharacterized protein LOC107774452 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107774452 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9136 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0412270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G247100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG059190 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G421700.1, TraesCS6D02G075000.2 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625745 |