Basic Information
Locus ID:
gene-LOC132625160
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 81397942 | 81408552 | - | gene-LOC132625160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 79,842.99 Da | 41.86 | 91.97 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 437 | 686 | 2.8E-23 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 103 | 161 | 5.7E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 75 | 1.6E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 437 | 686 | 2.93E-37 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 189 | 5.67E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 200 | 8.3E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 507 | 693 | 2.1E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 399 | 506 | 1.8E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 424 | 690 | 18.930386 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18640.1 | Leucine-rich repeat protein kinase family protein. Required for root hair elongation during tip growth. | 0 |
| RefSeq | XP_049370277.1 | protein MALE DISCOVERER 2-like [Solanum verrucosum] | 0 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 0 | |
| TrEMBL | M1AN89 | Receptor protein kinase OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology