Basic Information
Locus ID:
gene-LOC132625127
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 90920250 | 90929897 | - | gene-LOC132625127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 112,842.87 Da | 38.46 | 81.83 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 2.26797E-174 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 4.0E-91 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 602 | 815 | 4.7E-56 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 9.7E-19 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 897 | 1001 | 5.2E-12 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 355 | 1.5E-108 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 451 | 1.67E-26 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1005 | 1.73E-150 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 601 | 863 | 1.4E-100 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 399 | 6.6E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 884 | 1005 | 6.4E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 4.5E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 600 | 8.7E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 455 | 5.8E-21 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 8.7E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_025885286.1 | alpha-mannosidase isoform X1 [Solanum lycopersicum] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6IN99 | Alpha-mannosidase OS=Nicotiana attenuata OX=49451 GN=A4A49_09138 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology