Basic Information
Locus ID:
gene-LOC132625082
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 2224927 | 2238126 | + | gene-LOC132625082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 114,034.51 Da | 45.81 | 79.08 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 822 | 977 | 1.78235E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 292 | 621 | 3.24287E-87 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 737 | 774 | 2.1E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 313 | 699 | 1.8E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 871 | 967 | 3.2E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 1024 | 4.73E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 733 | 796 | 3.09E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 277 | 621 | 1.4E-45 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 718 | 788 | 6.3E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 504 | 634 | 2.3E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 386 | 474 | 4.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 1025 | 3.2E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 262 | 353 | 1.2E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 884 | 967 | 9.9E-20 | IPR001650 |
| SMART | SM00184 | ring_2 | 737 | 775 | 1.4E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 288 | 598 | 4.2E-27 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 737 | 773 | 11.191014 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 307 | 583 | 11.276146 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 843 | 1020 | 13.785375 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 752 | 761 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 495 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015066879.1 | helicase-like transcription factor CHR28 isoform X1 [Solanum pennellii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3D2B2 | Helicase-like transcription factor CHR28 OS=Capsicum chinense OX=80379 GN=BC332_03433 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology