Basic Information
Locus ID:
gene-LOC132625058
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6380701 | 6384518 | - | gene-LOC132625058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 127,845.11 Da | 37.53 | 87.39 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 502 | 772 | 9.44287E-95 | - |
| Pfam | PF12819 | Malectin-like domain | 31 | 405 | 6.4E-42 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 501 | 771 | 2.1E-48 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 918 | 1133 | 4.4E-19 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 854 | 1133 | 1.52E-35 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 477 | 776 | 9.71E-77 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 28 | 192 | 5.9E-21 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 220 | 406 | 3.6E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 948 | 1145 | 1.0E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 851 | 946 | 3.4E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 458 | 572 | 9.8E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 573 | 787 | 2.3E-60 | - |
| SMART | SM00220 | serkin_6 | 496 | 776 | 6.8E-29 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 496 | 775 | 37.276318 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 878 | 1137 | 15.806772 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 502 | 525 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 621 | 633 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_049382073.1 | receptor-like protein kinase FERONIA [Solanum stenotomum] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | M1DMR8 | Kinase OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri18G05091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028085 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624729, gene-LOC132625058 |
| Solanaceae | Solanum chilense | 1 | SOLCI001066700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009272 |