Basic Information
Locus ID:
gene-LOC132624965
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 85285376 | 85295976 | - | gene-LOC132624965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 107,295.44 Da | 56.59 | 80.82 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 245 | 361 | 2.13297E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 734 | 768 | 5.7E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 252 | 359 | 9.6E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 845 | 906 | 3.9E-5 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 129 | 386 | 2.2E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 704 | 769 | 1.08E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 841 | 913 | 1.37E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 703 | 776 | 1.5E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 129 | 391 | 1.8E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 838 | 920 | 1.7E-8 | - |
| SMART | SM00577 | forpap2 | 196 | 370 | 2.4E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 842 | 910 | 9.5E-8 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 706 | 770 | 1.0E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 841 | 911 | 12.256695 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 135 | 383 | 15.26242 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 705 | 771 | 11.479855 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 935 | - | - |
| Coils | Coil | Coil | 899 | 919 | - | - |
| Coils | Coil | Coil | 752 | 772 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_009623032.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Nicotiana tomentosiformis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7XT78 | protein-serine/threonine phosphatase OS=Nicotiana sylvestris OX=4096 GN=LOC104237269 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology