Basic Information
Locus ID:
gene-LOC132624729
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 100077890 | 100083417 | + | gene-LOC132624729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 138,808.38 Da | 34.17 | 85.12 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 533 | 801 | 1.30353E-91 | - |
| CDD | cd14066 | STKc_IRAK | 919 | 1195 | 6.16534E-90 | - |
| Pfam | PF12819 | Malectin-like domain | 66 | 439 | 1.2E-41 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 916 | 1192 | 1.4E-48 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 532 | 800 | 3.4E-49 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 890 | 1198 | 1.35E-77 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 509 | 802 | 1.27E-75 | IPR011009 |
| Gene3D | G3DSA:2.60.120.430 | - | 254 | 440 | 2.1E-29 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 63 | 226 | 1.3E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 604 | 823 | 2.9E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 996 | 1217 | 7.6E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 897 | 995 | 1.8E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 490 | 603 | 2.6E-32 | - |
| SMART | SM00220 | serkin_6 | 913 | 1195 | 7.0E-41 | IPR000719 |
| SMART | SM00220 | serkin_6 | 527 | 805 | 1.7E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 913 | 1197 | 38.98653 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 527 | 804 | 37.318718 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 649 | 661 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 919 | 949 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 533 | 556 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1197 | 1245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1197 | 1211 | - | - |
| Coils | Coil | Coil | 1185 | 1205 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_016558017.2 | putative receptor-like protein kinase At5g39000 [Capsicum annuum] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2XAY7 | Protein kinase domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_03129 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri18G05091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028085 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624729, gene-LOC132625058 |
| Solanaceae | Solanum chilense | 1 | SOLCI001066700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009272 |