Basic Information
Locus ID:
gene-LOC132624662
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 93188914 | 93189819 | + | gene-LOC132624662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 35,018.37 Da | 52.85 | 78.67 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 251 | 292 | 2.77778E-16 | - |
| Pfam | PF13639 | Ring finger domain | 249 | 292 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 235 | 297 | 1.77E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 298 | 3.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 251 | 291 | 3.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 292 | 12.725326 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021644651.1 | uncharacterized protein LOC110638411 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A314KS33 | E3 ubiquitin-protein ligase ring1-like protein OS=Nicotiana attenuata OX=49451 GN=A4A49_52539 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624661, gene-LOC132624662 |
| Solanaceae | Solanum chilense | 1 | SOLCI000066500 |