Basic Information
Locus ID:
gene-LOC132624661
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 93182521 | 93183456 | + | gene-LOC132624661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 35,731.17 Da | 51.69 | 86.78 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 255 | 297 | 6.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 303 | 1.29E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 303 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 256 | 296 | 4.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 256 | 297 | 13.035139 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006303818.1 | E3 ubiquitin-protein ligase RDUF1 [Capsella rubella] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | M1DZ01 | Zinc finger family protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624661, gene-LOC132624662 |
| Solanaceae | Solanum chilense | 1 | SOLCI000066500 |