Basic Information
Locus ID:
gene-LOC132624657
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4415806 | 4417062 | + | gene-LOC132624657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 47,252.03 Da | 41.75 | 108.21 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 54 | 5.77089E-18 | - |
| Pfam | PF04564 | U-box domain | 6 | 79 | 1.1E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 108 | 386 | 2.92E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 84 | 3.39E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 100 | 412 | 1.8E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 80 | 4.2E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 76 | 3.1E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 83 | 32.005508 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_016557654.1 | E3 ubiquitin-protein ligase PUB24-like [Capsicum annuum] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FPH1 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107857237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology