Basic Information
Locus ID:
gene-LOC132624497
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
LRR receptor-like serine threonine-protein kinase RFK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 80057455 | 80085301 | - | gene-LOC132624497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 225,339.52 Da | 33.55 | 95.32 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 676 | 943 | 1.48755E-94 | - |
| CDD | cd14066 | STKc_IRAK | 1682 | 1949 | 4.1158E-95 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1679 | 1945 | 4.1E-46 | IPR001245 |
| Pfam | PF11721 | Malectin domain | 408 | 594 | 2.4E-39 | IPR021720 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 673 | 936 | 8.9E-49 | IPR001245 |
| Pfam | PF11721 | Malectin domain | 1416 | 1601 | 2.0E-39 | IPR021720 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1659 | 1970 | 3.1E-79 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 652 | 943 | 1.29E-80 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 84 | 360 | 6.29E-44 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 1092 | 1368 | 5.33E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 196 | 5.5E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 746 | 951 | 4.7E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 264 | 1.1E-13 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 634 | 745 | 7.9E-38 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 1414 | 1605 | 7.2E-34 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 406 | 598 | 2.8E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1752 | 1955 | 3.7E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1056 | 1204 | 2.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1205 | 1274 | 4.3E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1275 | 1393 | 2.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 384 | 2.2E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1642 | 1751 | 6.4E-38 | - |
| SMART | SM00220 | serkin_6 | 1676 | 1947 | 2.3E-29 | IPR000719 |
| SMART | SM00220 | serkin_6 | 670 | 1020 | 1.3E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 670 | 1020 | 38.407036 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1676 | 1951 | 37.799274 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 792 | 804 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1798 | 1810 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 676 | 698 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29750.2 | receptor-like kinase in flowers 1. Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains. | 0 |
| RefSeq | XP_015066933.2 | uncharacterized protein LOC107011799 [Solanum pennellii] | 0 |
| Q9FXF2 | Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana OX=3702 GN=RKF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8UTS4 | probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Sesamum indicum OX=4182 GN=LOC105180117 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology