Basic Information
Locus ID:
gene-LOC132624405
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 71180126 | 71181158 | - | gene-LOC132624405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 22,813.36 Da | 52.15 | 72.86 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 165 | 202 | 3.88135E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 162 | 207 | 4.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 210 | 2.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 213 | 1.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 202 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 203 | 10.409105 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 130 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009628205.1 | uncharacterized protein LOC104118626 [Nicotiana tomentosiformis] | 0 |
| TrEMBL | A0A1S3ZA07 | uncharacterized protein LOC107784582 OS=Nicotiana tabacum OX=4097 GN=LOC107784582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology