Basic Information
Locus ID:
gene-LOC132623793
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 94766358 | 94775303 | + | gene-LOC132623793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 45,625.91 Da | 51.27 | 95.29 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13857 | Ankyrin repeats (many copies) | 41 | 92 | 5.0E-11 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 179 | 379 | 1.6E-27 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 143 | 384 | 6.97E-41 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 25 | 112 | 2.95E-20 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 127 | 390 | 6.1E-45 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 8 | 126 | 3.2E-23 | IPR036770 |
| SMART | SM00248 | ANK_2a | 87 | 117 | 2000.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 54 | 83 | 1.1E-6 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 7 | 390 | 8.9E-88 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 54 | 86 | 12.7794 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 141 | 385 | 23.156452 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 54 | 86 | 14.15847 | IPR002110 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_015064444.1 | integrin-linked protein kinase 1-like [Solanum pennellii] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | M1D0F3 | Serine-threonine protein kinase OS=Solanum tuberosum OX=4113 GN=102602873 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag4G00547 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2909.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G12649 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029649, Pov_00029657 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.720, evm.TU.Scaffold_3_RagTag.721 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13793 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6407 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.778 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012750 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5245 |
| Salicaceae | Populus euphratica | 1 | populus_peu24920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623793 |
| Solanaceae | Solanum chilense | 1 | SOLCI007409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009611 |