Basic Information
Locus ID:
gene-LOC132623412
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 102344616 | 102349567 | - | gene-LOC132623412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 54,802.47 Da | 45.90 | 113.53 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 37 | 74 | 2.1E-5 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 125 | 418 | 6.91E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 78 | 2.88E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 110 | 464 | 3.5E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 35 | 82 | 9.868391 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26340.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_016579465.2 | F-box/FBD/LRR-repeat protein At5g22700 [Capsicum annuum] | 0 |
| Q8H1R7 | F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana OX=3702 GN=At4g26340 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8H7Z9 | F-box/FBD/LRR-repeat protein At5g22700-like OS=Capsicum annuum OX=4072 GN=LOC107877306 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |