Basic Information
Locus ID:
gene-LOC132623104
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 67344421 | 67346496 | + | gene-LOC132623104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 41,740.96 Da | 49.12 | 82.93 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 2.4617E-20 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 204 | 1.59E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 202 | 1.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 375 | - | - |
| Coils | Coil | Coil | 291 | 318 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019261037.1 | PREDICTED: RING-H2 finger protein ATL46-like [Nicotiana attenuata] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314LAF5 | Ring-h2 finger protein atl46 OS=Nicotiana attenuata OX=49451 GN=ATL46_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology