Basic Information
Locus ID:
gene-LOC132623052
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 80740307 | 80743090 | - | gene-LOC132623052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 21,991.90 Da | 25.09 | 93.91 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 74 | 126 | 1.68189E-12 | - |
| Pfam | PF12906 | RING-variant domain | 74 | 125 | 1.4E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 127 | 4.8E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 136 | 7.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 73 | 126 | 1.0E-12 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 66 | 132 | 18.750553 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_049371856.1 | uncharacterized protein LOC125836688 isoform X1 [Solanum verrucosum] | 0 |
| TrEMBL | M1CRQ1 | RING-CH-type domain-containing protein OS=Solanum tuberosum OX=4113 GN=102600622 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology