Basic Information
Locus ID:
gene-LOC132622874
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 64303248 | 64305404 | - | gene-LOC132622874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 24,063.92 Da | 52.83 | 59.91 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 25 | 69 | 2.66147E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 25 | 72 | 3.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 80 | 5.2E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | 4.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 27 | 67 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 12.902362 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 42 | 51 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 115 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006344828.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185-like [Solanum tuberosum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | M0ZL08 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102600779 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology