Basic Information
Locus ID:
gene-LOC132622598
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc-finger domain of monoamine-oxidase A repressor R1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 71762670 | 71769030 | + | gene-LOC132622598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 153,664.09 Da | 51.21 | 66.06 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1199 | 1248 | 7.93719E-4 | - |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1156 | 1259 | 5.9E-13 | IPR003347 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 619 | 689 | 3.9E-6 | IPR018866 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 927 | 1303 | 1.26E-34 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 910 | 1285 | 6.7E-166 | - |
| SMART | SM00558 | cupin_9 | 1027 | 1276 | 1.6E-72 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 623 | 670 | 9.022323 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1046 | 1276 | 27.844893 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 217 | - | - |
| Coils | Coil | Coil | 1115 | 1135 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_006348210.1 | PREDICTED: lysine-specific demethylase JMJ25 [Solanum tuberosum] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | M1BCY1 | Transcription factor jumonji domain-containing protein OS=Solanum tuberosum OX=4113 GN=102601383 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology