Basic Information
Locus ID:
gene-LOC132622484
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 84240964 | 84243050 | - | gene-LOC132622484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 19,973.57 Da | 54.23 | 100.72 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 180 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 66 | 96 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 180 | 6.62E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 181 | 5.5E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 142 | 181 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 96 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 181 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 181 | 10.809215 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_047262877.1 | uncharacterized protein LOC107859368 isoform X2 [Capsicum annuum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FTV6 | lissencephaly-1 homolog OS=Capsicum annuum OX=4072 GN=LOC107859368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology