Basic Information
Locus ID:
gene-LOC132622388
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Cysteine-rich receptor-like protein kinase 42
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 104440479 | 104444805 | + | gene-LOC132622388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 73,145.66 Da | 36.05 | 90.58 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 319 | 582 | 6.80767E-90 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 159 | 232 | 6.4E-11 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 69 | 124 | 1.2E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 317 | 581 | 3.1E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 295 | 600 | 2.16E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 33 | 126 | 2.2E-13 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 141 | 235 | 2.3E-14 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 389 | 588 | 5.2E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 272 | 388 | 4.3E-29 | - |
| SMART | SM00220 | serkin_6 | 313 | 597 | 1.7E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 597 | 36.527214 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 25 | 126 | 14.343502 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 135 | 235 | 14.153408 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 319 | 341 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 434 | 446 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 660 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40380.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_049346554.1 | cysteine-rich receptor-like protein kinase 42 [Solanum verrucosum] | 0 |
| Q9FNE1 | Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana OX=3702 GN=CRK42 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BU95 | Cysteine-rich receptor-like protein kinase 42 OS=Solanum chilense OX=4083 GN=EJD97_003482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology