Basic Information
Locus ID:
gene-LOC132622306
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 68084963 | 68103844 | + | gene-LOC132622306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 64,544.46 Da | 48.46 | 70.49 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 300 | 587 | 1.55488E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 378 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 388 | 422 | 0.0036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 552 | 587 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 336 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 468 | 501 | 9.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 298 | 587 | 1.76E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 434 | 2.2E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 435 | 587 | 1.8E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 548 | 587 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 544 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 461 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 422 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 502 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 336 | 2.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 431 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 378 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 345 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 555 | 587 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 555 | 587 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 389 | 423 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 378 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 409 | 423 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 323 | 337 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 323 | 337 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 365 | 379 | 4.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 574 | 587 | 4.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 255 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015158499.1 | PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Solanum tuberosum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FTV6 | lissencephaly-1 homolog OS=Capsicum annuum OX=4072 GN=LOC107859368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology