Basic Information
Locus ID:
gene-LOC132622111
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 100099226 | 100101480 | - | gene-LOC132622111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 70,243.67 Da | 42.12 | 92.51 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 269 | 303 | 2.13703E-6 | - |
| Pfam | PF00069 | Protein kinase domain | 374 | 619 | 1.1E-37 | IPR000719 |
| Pfam | PF01476 | LysM domain | 188 | 232 | 0.0012 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 338 | 621 | 2.02E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 638 | 3.8E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 326 | 420 | 1.4E-14 | - |
| SMART | SM00257 | LysM_2 | 121 | 167 | 1.4 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 232 | 0.0055 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 231 | 10.498706 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 282 | 632 | 32.018471 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 258 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_016561194.2 | lysM domain receptor-like kinase 4 [Capsicum annuum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3ABB5 | LysM domain receptor-like kinase 4 OS=Capsicum annuum OX=4072 GN=T459_06640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology