Basic Information
Locus ID:
gene-LOC132622071
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 96793096 | 96799808 | + | gene-LOC132622071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 59,971.19 Da | 49.07 | 98.94 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 446 | 478 | 3.4E-5 | IPR006566 |
| Pfam | PF00646 | F-box domain | 75 | 112 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 215 | 420 | 4.79E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 124 | 1.57E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 437 | 2.1E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 70 | 117 | 2.2E-6 | - |
| SMART | SM00256 | fbox_2 | 79 | 120 | 9.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 73 | 121 | 11.140122 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15060.1 | 0 | |
| RefSeq | XP_016467467.1 | PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like isoform X1 [Nicotiana tabacum] | 0 |
| Q501G5 | F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3ZSX7 | F-box/FBD/LRR-repeat protein At5g56420-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107790082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |