Basic Information
Locus ID:
gene-LOC132622015
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 126569961 | 126573219 | + | gene-LOC132622015 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 102,122.05 Da | 36.56 | 106.73 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 409 | 469 | 2.0E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 508 | 563 | 1.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 221 | 278 | 1.0E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 676 | 912 | 1.7E-13 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 51 | 69 | 2.6E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 350 | 2.24E-43 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 666 | 915 | 2.52E-30 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 299 | 575 | 1.16E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 731 | 921 | 2.1E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 288 | 1.5E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 187 | 1.9E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 594 | 4.7E-82 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 408 | 431 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 243 | 269 | 99.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 526 | 555 | 290.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 147 | 173 | 370.0 | - |
| SMART | SM00369 | LRR_typ_2 | 550 | 572 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 266 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 526 | 549 | 97.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 456 | 482 | 32.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 335 | 368 | 580.0 | - |
| SMART | SM00369 | LRR_typ_2 | 360 | 384 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 335 | 359 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 194 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 120 | 5.2 | IPR003591 |
| SMART | SM00220 | serkin_6 | 663 | 915 | 6.9E-5 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 456 | 480 | 170.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 99 | 120 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 651 | 922 | 15.594763 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 222 | 235 | 3.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 243 | 256 | 3.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_049381192.1 | leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Solanum stenotomum] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7IT37 | Protein kinase domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622003, gene-LOC132622015 |