Basic Information
Locus ID:
gene-LOC132622003
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 126561220 | 126565010 | + | gene-LOC132622003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 102,988.66 Da | 36.62 | 112.22 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 129 | 187 | 2.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 511 | 566 | 2.4E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 437 | 459 | 0.019 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 730 | 927 | 3.4E-14 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 203 | 571 | 6.43E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 669 | 933 | 7.07E-32 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 58 | 288 | 8.96E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 746 | 935 | 2.2E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 598 | 1.4E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 289 | 4.8E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 191 | 9.9E-26 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 127 | 149 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 363 | 387 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 174 | 198 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 435 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 529 | 552 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 553 | 575 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 292 | 316 | 280.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 681 | 931 | 6.2E-5 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 459 | 483 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 100 | 123 | 74.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 531 | 553 | 7.32692 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 666 | 931 | 16.075317 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 102 | 123 | 7.034293 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 529 | 542 | 7.5E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 103 | 116 | 7.5E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_004250590.2 | leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Solanum lycopersicum] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7IT37 | Protein kinase domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622003, gene-LOC132622015 |