Basic Information
Locus ID:
gene-LOC132621884
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 124906968 | 124911265 | + | gene-LOC132621884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 55,011.33 Da | 31.84 | 86.68 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 246 | 411 | 6.77016E-28 | IPR013955 |
| CDD | cd04480 | RPA1_DBD_A_like | 1 | 79 | 1.64757E-18 | - |
| CDD | cd04481 | RPA1_DBD_B_like | 116 | 213 | 3.90426E-9 | - |
| Pfam | PF02721 | Domain of unknown function DUF223 | 18 | 83 | 3.7E-8 | IPR003871 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 264 | 377 | 2.6E-18 | IPR013955 |
| Pfam | PF16900 | Replication protein A OB domain | 110 | 202 | 4.7E-7 | IPR031657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 3 | 87 | 1.83E-9 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 240 | 408 | 7.88E-27 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 98 | 215 | 2.84E-12 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 89 | 225 | 1.1E-24 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 83 | 9.1E-12 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 236 | 407 | 3.6E-34 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_030479838.1 | replication protein A 70 kDa DNA-binding subunit D-like isoform X2 [Cannabis sativa] | 0 |
| TrEMBL | A0A3Q7EYD7 | Probable purine permease OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology