Basic Information
Locus ID:
gene-LOC132621841
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
AFB3
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 106128075 | 106131160 | - | gene-LOC132621841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 63,047.03 Da | 44.74 | 100.03 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 6 | 44 | 3.0E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 64 | 110 | 5.1E-12 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 546 | 1.22E-31 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 43 | 2.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 44 | 565 | 7.4E-160 | IPR032675 |
| SMART | SM00256 | fbox_2 | 7 | 48 | 0.0019 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 127 | 152 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 336 | 365 | 600.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 287 | 311 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 499 | 120.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_019240567.1 | PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Nicotiana attenuata] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FSL0 | Protein AUXIN SIGNALING F-BOX 3 OS=Capsicum annuum OX=4072 GN=T459_07210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology