Basic Information
Locus ID:
gene-LOC132621805
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 123005018 | 123006684 | - | gene-LOC132621805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 38,061.32 Da | 72.30 | 72.61 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 226 | 268 | 9.12837E-24 | - |
| Pfam | PF13639 | Ring finger domain | 226 | 268 | 4.1E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 15 | 49 | 8.8E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 274 | 7.51E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 274 | 6.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 227 | 267 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 227 | 268 | 12.267982 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016582279.1 | E3 ubiquitin-protein ligase RZF1 [Capsicum annuum] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2Y286 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107879856 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology