Basic Information
Locus ID:
gene-LOC132621665
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 58311889 | 58321114 | - | gene-LOC132621665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 40,301.69 Da | 51.38 | 79.24 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 333 | 375 | 5.29287E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.06897E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 152 | 201 | 1.12121E-30 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.6E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 4.8E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 337 | 372 | 1.9E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 159 | 196 | 2.8E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 155 | 205 | 7.92E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.99E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 317 | 380 | 1.17E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 253 | 318 | 1.44E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.0E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 248 | 313 | 5.3E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 151 | 201 | 2.7E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 329 | 376 | 2.1E-23 | - |
| SMART | SM00165 | uba_6 | 158 | 198 | 1.2E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 337 | 374 | 1.8E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-22 | IPR000626 |
| SMART | SM00727 | CBM | 255 | 298 | 1.3E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 380 | 1.3E-118 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 334 | 375 | 14.763827 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 19.738609 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 156 | 199 | 12.354117 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 331 | 347 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 378 | 3.8E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 362 | 3.8E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 135 | - | - |
| Coils | Coil | Coil | 284 | 304 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_049383417.1 | ubiquitin receptor RAD23d-like isoform X1 [Solanum stenotomum] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | M1C8L6 | Ubiquitin receptor RAD23 OS=Solanum tuberosum OX=4113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology