Basic Information
Locus ID:
gene-LOC132621662
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 93738160 | 93739554 | + | gene-LOC132621662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 39,866.59 Da | 32.90 | 97.85 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 99 | 361 | 9.55331E-95 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 99 | 334 | 8.8E-58 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 72 | 344 | 8.16E-89 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 69 | 363 | 2.1E-107 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 148 | 164 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 281 | 293 | - | IPR033749 |
| Coils | Coil | Coil | 326 | 346 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 75 | 361 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 75 | 361 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_049382288.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Solanum stenotomum] | 0 |
| Q42698 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2G3AAC8 | geranylgeranyl pyrophosphate synthase, chloroplastic-like OS=Capsicum annuum OX=4072 GN=LOC107854680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology