Basic Information
Locus ID:
gene-LOC132621555
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 82837321 | 82841685 | + | gene-LOC132621555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 63,297.49 Da | 29.12 | 92.69 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 388 | 570 | 8.30164E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 29 | 188 | 1.07179E-88 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 433 | 558 | 7.9E-14 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 26 | 192 | 1.1E-33 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 223 | 340 | 4.3E-24 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 218 | 364 | 2.4E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 388 | 582 | 6.97E-41 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 26 | 205 | 4.88E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 379 | 572 | 8.5E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 25 | 198 | 1.7E-58 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 213 | 375 | 4.3E-43 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 23 | 582 | 3.3E-207 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_049384824.1 | pyruvate decarboxylase 1 [Solanum stenotomum] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | M1C3S5 | pyruvate decarboxylase OS=Solanum tuberosum OX=4113 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology