Basic Information
Locus ID:
gene-LOC132621482
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 104351708 | 104361119 | + | gene-LOC132621482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 83,218.46 Da | 58.60 | 59.62 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 22 | 52 | 1.52705E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 379 | 508 | 1.2102E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 391 | 499 | 2.4E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 354 | 4.9E-48 | IPR011545 |
| Pfam | PF00397 | WW domain | 21 | 51 | 2.5E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 232 | 515 | 8.85E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 2.23E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 133 | 369 | 2.4E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 370 | 541 | 4.7E-58 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 60 | 9.7E-6 | - |
| SMART | SM00487 | ultradead3 | 177 | 382 | 1.0E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 20 | 53 | 4.9E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 419 | 499 | 8.3E-33 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 365 | 30.63505 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 158 | 186 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 538 | 24.799809 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.152 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 311 | 319 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 679 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_009799735.1 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 [Nicotiana sylvestris] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7Y6I0 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 GN=LOC104245772 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology