Basic Information
Locus ID:
gene-LOC132621388
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAN-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 87306595 | 87312110 | + | gene-LOC132621388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 90,832.94 Da | 37.02 | 89.36 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 331 | 409 | 3.89166E-18 | - |
| CDD | cd14066 | STKc_IRAK | 502 | 768 | 3.08129E-89 | - |
| CDD | cd00028 | B_lectin | 33 | 150 | 3.84965E-23 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 331 | 394 | 6.7E-14 | IPR003609 |
| Pfam | PF00069 | Protein kinase domain | 498 | 698 | 2.5E-46 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 74 | 174 | 1.1E-20 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 203 | 306 | 5.2E-21 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 74 | 174 | 1.09E-13 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 484 | 774 | 3.14E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 572 | 776 | 7.6E-57 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 21 | 147 | 6.5E-13 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 468 | 571 | 2.5E-34 | - |
| SMART | SM00473 | ntp_6 | 331 | 408 | 3.6E-5 | IPR003609 |
| SMART | SM00108 | blect_4 | 33 | 150 | 6.7E-21 | IPR001480 |
| SMART | SM00220 | serkin_6 | 496 | 766 | 2.1E-31 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 1 | 808 | 1.1E-222 | IPR024171 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 322 | 409 | 9.044649 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 27 | 144 | 13.233498 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 496 | 783 | 37.657936 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 617 | 629 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 502 | 525 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27290.2 | - | 0 |
| RefSeq | XP_016560054.2 | uncharacterized protein LOC107859520 [Capsicum annuum] | 0 |
| O81832 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana OX=3702 GN=At4g27290 PE=3 SV=4 | 0 | |
| TrEMBL | A0A1J6JV58 | Receptor-like serine/threonine-protein kinase OS=Nicotiana attenuata OX=49451 GN=SD18_3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri5G28475 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621388 |
| Solanaceae | Solanum chilense | 1 | SOLCI002696000 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107010092, gene-LOC107010094, gene-LOC107016926 ... |