Basic Information
Locus ID:
gene-LOC132621352
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 105309648 | 105313640 | + | gene-LOC132621352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 54,994.70 Da | 34.89 | 84.58 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 209 | 247 | 5.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 206 | 285 | 7.19E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 261 | 336 | 3.66E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 248 | 350 | 3.4E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 205 | 246 | 6.6E-6 | - |
| SMART | SM00367 | LRR_CC_2 | 295 | 320 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 269 | 294 | 0.21 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 206 | 246 | 10.186324 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 425 | 436 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_009781070.1 | PREDICTED: F-box protein SKIP14-like [Nicotiana sylvestris] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4B5H5 | F-box protein SKIP14-like OS=Nicotiana tabacum OX=4097 GN=LOC107804781 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology