Basic Information
Locus ID:
gene-LOC132621242
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 85808618 | 85820187 | + | gene-LOC132621242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.33 | 113,949.43 Da | 57.95 | 78.64 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 3 | 253 | 8.68026E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 5.2E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 44 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 86 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 1.5E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 868 | 1026 | 9.6E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 5.7E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 198 | 4.6E-60 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 300 | 1.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 2.5E-12 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.444681 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.606489 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.593109 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 14.284707 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 7.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 7.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 7.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1029 | 19.230848 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 847 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_016559932.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X1 [Capsicum annuum] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FL23 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Capsicum annuum OX=4072 GN=LOC107859429 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology