Basic Information
Locus ID:
gene-LOC132621074
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 86499338 | 86504719 | + | gene-LOC132621074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 65,939.23 Da | 32.52 | 89.33 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 24 | 63 | 7.8E-21 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 172 | 187 | 0.53 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 83 | 129 | 9.0E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 41 | 553 | 3.4E-35 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 62 | 5.2E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 63 | 586 | 1.1E-169 | IPR032675 |
| SMART | SM00256 | fbox_2 | 26 | 67 | 1.4E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 329 | 352 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 496 | 520 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 471 | 495 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 121 | 145 | 86.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 447 | 470 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 387 | 411 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 146 | 171 | 660.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_016559991.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Capsicum annuum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G3D604 | Protein AUXIN SIGNALING F-BOX 3 OS=Capsicum chinense OX=80379 GN=BC332_04750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology