Basic Information
Locus ID:
gene-LOC132621063
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 93950717 | 93957834 | - | gene-LOC132621063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 41,794.24 Da | 52.21 | 81.22 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.63792E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 344 | 386 | 1.09471E-23 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 152 | 201 | 1.31494E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 196 | 2.0E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 348 | 383 | 1.9E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 268 | 323 | 8.2E-23 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 3.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 155 | 208 | 7.34E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 327 | 391 | 9.25E-16 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 264 | 331 | 1.09E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 151 | 202 | 4.3E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 258 | 324 | 2.5E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 340 | 387 | 1.3E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.4E-27 | - |
| SMART | SM00165 | uba_6 | 158 | 198 | 2.2E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 348 | 385 | 4.0E-9 | IPR015940 |
| SMART | SM00727 | CBM | 266 | 309 | 1.1E-8 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.0E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 391 | 7.7E-117 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 18.73694 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 345 | 386 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 156 | 199 | 12.354117 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 374 | 389 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 294 | 316 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 373 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 358 | 1.2E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 105 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015067228.1 | ubiquitin receptor RAD23c isoform X2 [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | Q9STA6 | Ubiquitin receptor RAD23 OS=Solanum lycopersicum OX=4081 GN=rad23 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology