Basic Information
Locus ID:
gene-LOC132620328
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 55514564 | 55515888 | - | gene-LOC132620328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.32 | 30,204.99 Da | 57.01 | 63.25 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 182 | 2.63075E-21 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 182 | 1.6E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 186 | 7.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 188 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 181 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 182 | 13.344952 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 262 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049365180.1 | uncharacterized protein LOC125829999 [Solanum verrucosum] | 0 |
| Q7ZW78 | E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2 | 0 | |
| TrEMBL | M1BMX5 | Zinc finger protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37761 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0385s00009.v1.0 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015083 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620328 |
| Solanaceae | Solanum chilense | 2 | SOLCI001107600, SOLCI003716500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014240 |