Basic Information
Locus ID:
gene-LOC132620301
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 40066583 | 40068608 | + | gene-LOC132620301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 53,090.22 Da | 38.65 | 83.23 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 257 | 280 | 0.074 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 185 | 212 | 0.011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 220 | 246 | 0.35 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 157 | 181 | 0.0043 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 351 | 455 | 3.3E-35 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 89 | 230 | 3.4E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 231 | 396 | 1.5E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 157 | 184 | 4.0E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 150 | 184 | 8.911594 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 80 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_049412669.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Solanum stenotomum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | M1DWM0 | DYW_deaminase domain-containing protein OS=Solanum tuberosum OX=4113 GN=102591432 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology